Scaffold Ga0080005_138868

Overview

Basic Information

• Taxon OID: 3300005856
• Scaffold ID: Ga0080005_138868
• Source Dataset Name: Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 129010
• Total Scaffold Genes: 145
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (27.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Joseph's Coat, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021443	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080005_13886870	F021443	N/A	MKCLLQDEKLTFIFRHYYVSCYNYSYSNYQANGILSFAAMDLSFKIIKEQKRKSIILKKRKPIIHLLNYIDILNFNLNSNKFDITFFSINNYKIKLVYNLYLYRRRPFKDFAYKDSLKVIERENLCVIRFEDDFASRVQPKNVNLSAMVMHILEKEKSYEIDVGSIIFYCVLLM*
Ga0080005_13886871	F021443	N/A	MKCLLHDEKLTFVFKHYYISYYNCGFRNYQINGVLSFAIMDLAFKIIKEQKRKSITLKKRKPIIHLLNYIDILNFNLNSNKFGIDFISENNYKTELARNLYLYRTRPFKDFAKDSLEVIEYENLCVIRFTYDYASRIQPKNVNLAAMVIHILEKEESKIDVGSIIFYCVLLM*
Ga0080005_13886872	F021443	N/A	MKCLLHDEKLTFEFRNNYVSCDNYTYSNYQANGILSFAVMDLLIKIIKEQKRKSIVLKKRKPIIHLLNYVDILNFNLNSNKVDITLFSKNNYKTKLVYNLYLYRTRPFKDFVYKDSLKVIERENLCIIRFEYDYTTIVQLKNVNLAAMVMHILEKKKSRVIDESGIIFYCVFLM*