Scaffold Ga0080005_138222

Overview

Basic Information

• Taxon OID: 3300005856
• Scaffold ID: Ga0080005_138222
• Source Dataset Name: Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5968
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Joseph's Coat, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F081547	Metagenome / Metatranscriptome	114	Y
F085905	Metagenome	111	N
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080005_13822210	F061983	AGAAG	VFKVKVIPIKVIDEEGVLSEQEFQEVVKTRIYKGMKVLEVKDLGVDEFWRFAHYYELTTVVESGGLFDCYYGDVIDVGKLKDVGGIVVKENDSEPVRSMKALVAKWYNKKLVEEEKAYDVCNKLIT*
Ga0080005_13822212	F085905	N/A	MEESVSFPSSRLSQFDYVAMNAYWLNMRLKYFTDPMLYAVATGIWVINLMDDVDIAETGTQKNFEYGLVYIYSNSRIDTLFIVALTHYFNVKRESEYYRSIPMDAIQNVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVMARHLLPYSILEVVRRHMRK*
Ga0080005_13822213	F063848	N/A	VAKKRRSVHDPTLSVIHYQEQLEKMAKAYENSANRRNQRATTGFTNLKFVQQAVKDYLNEVSEAMKLPVIAQLAVEFLGVAMAYLKGSNEGYNSYALAGRVAQIATLRATHVIHTTTLTCAQVGEIINGMLKKISGATADPFTFTETDGVCKATVANPLPKMSVASVSTGYTVSLSDVLKAKTPEEVLMGK*
Ga0080005_1382223	F075084	AGGAGG	MIYARRLSASWYGYDTGVLLERALRRILRWSINYCNIVAKLGLQSEYCRRYTYYDEVPCEPVSEYDVEVAYSRIIRMIANYNNETVSKLLTKMTQECSTYEVRG*
Ga0080005_1382225	F080245	N/A	VIFVWSARVTIPGFREEIFVSPALINMYAEITEGVYEVGMFMVPHRGHALLFLPTMVIKVNEELMKDLEQTSIEDLNTPLNTIDHVFT*
Ga0080005_1382226	F087442	GAGG	MMREGLVKAGDLVIDCKPCYIAGTGFTKDDVYVVSEGTVVFKWYDKIAVITVSEEGTKLNLLDIIDVRFLVERNENCMVTKL*
Ga0080005_1382227	F081547	N/A	MPYLRGVFINFGEETYYLSCGIVKGGNLDPETYTISDPELMMVRLGRDLYIVTSELKLLIPVEPIRVLLNSETSKVYNEAIMQGNEVKPT*
Ga0080005_1382228	F076263	AGCAG	MLSAEDLSAILDDLEDLCARLPEGVTFHPTLEIHRHFANEEATYIKFDCRNHRYILTIIRQGIAKTTRVSSREELFRRIFPEYMPGYTGSYTEEFWGEE*