Scaffold Ga0080005_133721

Overview

Basic Information

• Taxon OID: 3300005856
• Scaffold ID: Ga0080005_133721
• Source Dataset Name: Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5543
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Joseph's Coat, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F070317	Metagenome / Metatranscriptome	123	Y
F077499	Metagenome / Metatranscriptome	117	Y
F077502	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080005_13372110	F077499	AGG	MADLFVFPHESLKPVNYPNITNVEIIFILTITVPMGEHPNADSPMDEKMRFLSTYMPLEFQKLYYMKTIDRALDILKYSLYSREENVLFEIANKINSMYDIKQLTNKIKDVECTKDLKQINVILTEAKRYIYPDISLSKHASAQAKQLGIKKYEYYSRIFQCYIEQDRDLDMLTLFRVSNIVYNYIRLNNLSNIMKKMQFKNDKMVQLAEKIKQRVKITLDAMADRRPIEPDESILNSITIKIKEIDLG*
Ga0080005_13372111	F056742	N/A	LKLADCRYKCKQAYFRRSLFVRMFITEVERVYNVKVNSCEDFCKFYVLFLSVSEILYGKHYNYAIFKAITRGRPNLYKCLKCDSVLTAEESITHALQHMKQLGYKPLNYEESI*
Ga0080005_1337217	F070317	GGTGG	MQTTVNNMSTMEELKELNLEKIVRDAQEGEVCVINKILKGKLTDLMPLIRDPATLSQKAMEFIQSRGDDVFYLFQCTTRQGRNVKLLVRQSFDPRSTFYSLMKKYKTIKVGDEINVFYNPEKRRYDFLL*
Ga0080005_1337218	F077502	GAG	MTDVAHIVIWIEKNLPEEGKLSELIDNVFSLIQEIILNNLSQGKQPISFQSVREIADTFREVIYRSIEQSVGTLTEEVKEQVDAYFFKKLNDIYDKYYS*