Scaffold Ga0080005

Basic Information
Taxon OID	3300005856 Open in IMG/M
Scaffold ID	Ga0080005_119855 Open in IMG/M
Source Dataset Name	Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0080005_119855 Open in IMG/M

Source Dataset Name

Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPADES assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3995
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3995

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Joseph's Coat, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Joseph's Coat, Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F070317	Metagenome / Metatranscriptome	123	Y
F077499	Metagenome / Metatranscriptome	117	Y
F077502	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080005_1198554	F056742	GGGGG	VKLADCRYKCKQAYFRKSLFVRMFINEVEKVYNVKIKSCEEFCKFYVIFLAVAEILYGKHYNYAIFKAITRGRPNLYACVKCNSVLTAEESITHALQHMKQLGYNPLSYTENI*
Ga0080005_1198555	F077499	GAG	MRDVFVFPYESLKAVQYPKITNAEIIFILTITIPIGGHPDADSPMDEKIRFLDTYMPLELQKLQYMKAIDKALDILKYFLYSKEDNVLLEIANKLNNMYEAKELVEKIKDAECTQDIGNMKVTLTEAKRYIYPDLSLSKYASAQAKKLNIRKYEYYARVFQCYIDQDKNLDMLTLFRVSNLVYDYLRLNNLSKTIKRMQFKNDRIAQLAEKIKERVNITLEAMTGKKIVEPDINVLNSITIRIKEIDLGG*
Ga0080005_1198557	F077502	GAG	MTGQGTDVAHIILWIEKNLPEEGKLSELIDNIFSLIQEIILNNLSQGRQPISFTSVREIADAFKEMVYKSVEQSIGTLTEEVKEQIDAYFFKKLSEIYSKYYE*
Ga0080005_1198558	F070317	AGAAGG	MTQATASNMSPLEELKELDLEKVVKDAQEGEICVVNKIYKGKLTDLLPLVRDPANLSQRAMEFIQRRGEDIFYLIQCTTREGRNVKLLVRQSFDPKSTFYNLMKKYKSIKVGDEINVFYNPEKRRYDFLL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0080005_119855

Overview

Ecosystem & Geography

Associated Families

Sequences