Scaffold Ga0079992_119525

Overview

Basic Information

• Taxon OID: 3300005855
• Scaffold ID: Ga0079992_119525
• Source Dataset Name: Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2646
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F086364	Metagenome	111	N
F100012	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079992_1195251	F100012	N/A	REAWEEGDVLYAEIVAELTERAIEILFDQHFLWVHIVESEDFEEWIPDGRYSFVAVHPETGQCLTFLKDPVHSGKSCASFRARIRSAEDAIDAVTRLAELIEQNLKSRAVE*
Ga0079992_1195252	F069506	GGAGG	MQLEQQTFTDEQIKQAIEEVWQELLQEADAEDYSLEEYLEDYRKYWDDPDFPNDIPEIVVRTVERLIGKTLAWYCELGRDPAGFTGEYSFIVVDPKTQKCLTFRQYTSDGINIHYFLSVTGTVVYYEDIIRLVNKLISYISPALNS*
Ga0079992_1195253	F086364	AGGAGG	MEREKIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPYTIEEAVELLTDRNFGWHEDALKDEWSYTGEFSFICVDPETFKCLTAERSNGSCTVSVVFPILSIDDAVQVVEYFLRLVQQA*