Scaffold Ga0068860_100148366

Overview

Basic Information

• Taxon OID: 3300005843
• Scaffold ID: Ga0068860_100148366
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2258
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Planktothrix (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020968	Metagenome / Metatranscriptome	221	Y
F026506	Metagenome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068860_1001483661	F020968	GGAGG	MTGELKIISRTYRKIKGKYYARIRYQIDDGKPLDILRQVKNKSAIKSKQAEIEVELLKNGPAQLDAGKVTFRQLAQYAKDNIYVAAVYDDQETKLKGVPSVVPAHACLNNLVAFFGDIDIRKINEKKLAQYQIARLTGTIRNLRKVTLSTVDRELSKARRLFNIAVDEGWLLRSPFTKAVSRNLIHDA
Ga0068860_1001483662	F026506	GAG	MTNKHKQVANLDGFDEGTYGLEVCNQRFATSNKVVQTKTNERVLAAGGAQ*