Scaffold Ga0068858_100382128

Overview

Basic Information

• Taxon OID: 3300005842
• Scaffold ID: Ga0068858_100382128
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1351
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001123	Metagenome / Metatranscriptome	770	Y
F001576	Metagenome / Metatranscriptome	669	Y
F103346	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068858_1003821281	F001576	N/A	KPAATKQPYVVKIKKSPLLNISVKAEKAKVSDVAQELSKQLKIPIFLGPERQNELLTIEFNELTLEPALQLMSPTVYVDYEIDTGSGAPPKPLGIYFFDANQGEPPLTQVVNGSTQSMLIEGNTEDGVEPETEDDKKKAEEQPLKVAFKDNLLTVKAKKQPLTLVLLKIGEELGIPVDIQDQNASVIDAEFSKLSIEDLVRQLSPHIRLYLRADLTRAERRALRLVLAEPPKATQ*
Ga0068858_1003821282	F001123	AGGAGG	LAKQNEIMRASATEEIAGLHSGSGVSGECGEIKKVFVEPTISVPVDVLEATTFFQAATSGVTN*
Ga0068858_1003821283	F103346	N/A	MAVIQVFDRPASQAFYSVAGRLLFTECSNPELRTLIVDLFSGWQLSPVSLPGRSPDIQIKFSCGEVPSGFPRDLDQFEIAEGGKCYTDASGLYLELRGAVVQLVNGSSVTV