NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068863_100237998

Scaffold Ga0068863_100237998


Overview

Basic Information
Taxon OID3300005841 Open in IMG/M
Scaffold IDGa0068863_100237998 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1757
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005485Metagenome399Y
F005849Metagenome388Y

Sequences

Protein IDFamilyRBSSequence
Ga0068863_1002379981F005485N/AMKCPACFSEIDDRSYRCKECHRIASYRRFCWRYRYFVLVIVALIGYWTIPGLVRRWFALDYNKLPHGALVSDQMTLSWLGLADKGWFCEEPHYKGSLLHLRHNIFQAKDVIVFVRGFTGDYVNTWGKPKVLLDDPRFNRNYDFVFCGFEKALFG
Ga0068863_1002379982F005849N/AFIGDYVNTWGKPKVLLDDPRFNRNYDLVFYGFKTALFGDVPAFDEAAASLDRTLSHLEQDYQSITIVTHSKGGLLAMRTLLNRAKDFPGKQPYKIHRIVMFTPLTENVSLAQLPEFVKLLGKESPDIAQMQANTYSELGRVKEDLKALLNPQDSIAATRKETFIKNVAEHLYVINAERDEIVDVGPNGEKIVSEAMRQLSQLPTLDVPHLVTLRYSDIGGSEEDVRETKIGVRDPSYAHGIVVKMGAQDAFFFSDHFEELLFDRIGVPPRSLAANAEQVRQNARDRIDAEIFEMNKFVVDKNAMVGLAWKDINDAVQTRLKDVPEPTRTKQMEDLTKQTYYVYIFLSLYARMDSLRSRGILSPNDDMIVTWKRSWLPNLMRSDLGRWMLDNNLMEYYSETMIKDLRDAAAEPAPSSPTPQARPQMGTH*
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