Scaffold Ga0068863_100152621

Overview

Basic Information

• Taxon OID: 3300005841
• Scaffold ID: Ga0068863_100152621
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2211
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans → unclassified Sideroxydans → Sideroxydans sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062100	Metagenome / Metatranscriptome	131	N
F069031	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068863_1001526211	F062100	AGGAGG	MALDFTIITDVRQRFGDMIRDEKASLRERESGIEDDAPFVGWEKSFAFRCPSVDRRQFALLLFQTLGVSVRQGLEINGQTIFGGIAPSVDFESRILGSGPEAHQDRSAIARWNGNVMLIHPNVLQESNILRVRAAEMTAGNVDDFVMDNVVVVFKTGRSALVNSVAATERPVIWAGP*
Ga0068863_1001526213	F069031	N/A	VGNDIAAMKPRIMLDGKRISSACAALGVFTVVLATLLPAHWQPVPLLFAGITLIAVSHVLTPCQDQITRWWRSRISKSSSPDRT*