Scaffold Ga0068863_100000717

Overview

Basic Information

• Taxon OID: 3300005841
• Scaffold ID: Ga0068863_100000717
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33332
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (47.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034040	Metagenome	175	Y
F047459	Metagenome	149	Y
F078152	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068863_10000071718	F047459	GGAGG	MRISLNNVWLTNDGVADLQAWTDAHGVRLNGRQVVQDVQFLRAVAAQPLARGNQVNVLRFTVTRQHASVAAAGAFAVTAFSALPANGLATIVCGAYGESPLTCTFAAVLEEVPESVFHGTRSDTTYVLRGGLITALSPLAESVVDAASLGTVYAYPQGGTVDGGNLADRLFSAELNLDGGAFA*
Ga0068863_10000071721	F078152	N/A	MKLTYLSTSFFPFAVPEKDSTFAANVGAQTVYPAGFSLDRALQIYWRAKEYRLVASGNGVLGEVTQALSVNGLLPPRNASVATDAYGLLTGFEPTGPADLVTGRGLRQVVPGSGTITASGPDGNGTNTGALFNLQVNLFYPEIFARDPVVKYGGLWWPAMSVSCSVTNTVELDSGGEAGIGFDGTTLPDPASTTEIGTCTFFGVTVPVFSTDLAPPSGPDPGETRTFSGTLTVEEEWG*
Ga0068863_1000007176	F034040	N/A	MNIETETPYADPAALLQARALKILKPCLDYWLDEQTLYLTLNLSRPHIPRVQLEAALRELRDKAYIDFRVDPLSRLTEWRLTPSGRALAQPL*