Scaffold Ga0068870_10043093

Overview

Basic Information

• Taxon OID: 3300005840
• Scaffold ID: Ga0068870_10043093
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2352
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003994	Metagenome	458	Y
F032436	Metagenome	180	Y
F064615	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068870_100430932	F003994	GGAG	MNAKPKERDRIFLVQCIWCGSKIRDDKEEEAKGVCLRCFYQILSNHLRAQKRTVYGEFVSDR*
Ga0068870_100430933	F064615	N/A	VRDSEDAQDQTATGECEDHINRMRLEVGLPVRVDYFFSRAYLKADANFGARYVRLSFERRDELQTKRYWLVWDATTVGGLLGDGQRALVR*
Ga0068870_100430934	F032436	GAG	MAISNELSSDVAVALLAEKKSPQELKQLKDIILEVHSALQKMSEETRTFRFRKKTQEGTKARL*