Scaffold Ga0008649_10080190

Overview

Basic Information

• Taxon OID: 3300005838
• Scaffold ID: Ga0008649_10080190
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_130m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1377
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040340	Metagenome / Metatranscriptome	162	Y
F089036	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0008649_100801904	F040340	GGA	MYAYEIGNELIWFYTHCAIVIVIADARGTLEPTINKWEKKLGIPVPEVQDDKRD*
Ga0008649_100801905	F089036	GGA	MKKIDLQGAILAGVGTLIVGLTGWLMTTTLGVDKDQDVMEVRLGHAEENYDKLKLDSPNHSLDTCPVCMHMKLGMN*