NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0008649_10080190

Scaffold Ga0008649_10080190


Overview

Basic Information
Taxon OID3300005838 Open in IMG/M
Scaffold IDGa0008649_10080190 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_130m_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1377
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040340Metagenome / Metatranscriptome162Y
F089036Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0008649_100801904F040340GGAMYAYEIGNELIWFYTHCAIVIVIADARGTLEPTINKWEKKLGIPVPEVQDDKRD*
Ga0008649_100801905F089036GGAMKKIDLQGAILAGVGTLIVGLTGWLMTTTLGVDKDQDVMEVRLGHAEENYDKLKLDSPNHSLDTCPVCMHMKLGMN*

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