Scaffold Ga0008649_10067195

Overview

Basic Information

• Taxon OID: 3300005838
• Scaffold ID: Ga0008649_10067195
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_130m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1539
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038425	Metagenome	166	Y
F065114	Metagenome	128	N
F075333	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0008649_100671952	F065114	AGG	MKRKQNLNLETPLLRGDSHAVMPSLGHGTGLSYRERETPESVSIGGLGCSGKVGAVEVPAYQTMNKHLTPSPLNLSLYNPEYLMSIFGVSERTEVATGSAPKVASCVKQKTQRFTDLTGDGYEKE*
Ga0008649_100671953	F075333	AGGAG	MKKNSMRYLEGLVERGVRKHLPALKHFRYRERGIESIVNSVVPTEHEDLMTVTKTARWLTTRAPEEYVYGDMVDIDNAIASNIAQYLTDYAKSYIGKVA*
Ga0008649_100671954	F038425	GGAG	MDGEKSRVHCPKCDERMWWWGYASSPNGDGSSELGLGCENNKCDGYEVLPEDVYDAVVTEEERIDA*