Scaffold Ga0078893_14693182

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_14693182
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1759
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013089	Metagenome	274	N
F020174	Metagenome	225	Y
F023580	Metagenome	209	N
F030437	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_146931822	F023580	AGG	MNNIKLFLIRNYGSTTEAAKTLDVTSNTVRNWCGRMPRNILKHLPEISETCGATFAEIVEEVLICEREGIE*
Ga0078893_146931824	F013089	N/A	MKTRNSIASSLNSKNPSAERGRNKSLKPKKMGQSKIKTIQPNGTYDSQNGLMYKFEIQLESGDSGEVSAKSQDRWSVGDEVEFEVTPSKWGDRMKLTKPGFTPNQSKANNPDIQKRIDASWAIGHAINQENDPEKILEAAEFLLSIRATLISKL*
Ga0078893_146931825	F020174	N/A	MKINSYNMDEIKEDVLKYWNWAQKEFEGEDIDRLRFEVESAVTNLNRYINNEFRRKAMGKTDMRSK*
Ga0078893_146931826	F030437	N/A	GKLGTQSASAYRTSIWTPVNHEDFYKNRQKYIDAGWQSYCWTKGAEGYDKYFVSKLPKDEFEHLLMVEKKYGYYTLFFHIDED*