NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078893_12372535

Scaffold Ga0078893_12372535


Overview

Basic Information
Taxon OID3300005837 Open in IMG/M
Scaffold IDGa0078893_12372535 Open in IMG/M
Source Dataset NameExploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6820
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location NamePort Hacking, Australia
CoordinatesLat. (o)-34.1192Long. (o)151.2267Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003027Metagenome / Metatranscriptome512Y
F019643Metagenome / Metatranscriptome228Y
F050996Metagenome144Y
F060890Metagenome132Y
F065685Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0078893_1237253513F065685GAGMKPVVGIGSNTKFGRVLKILKDGVVVENGRGEKDKVSFRRIESSLKGKV*
Ga0078893_1237253515F019643N/AKTDSLELIFSTEKEPRDACITAIRELLPNDTYDEYMYCDERGYRGYDTADKMTKVFLTEDIMLDAGMKE*
Ga0078893_1237253517F003027GGAGMKTAKGNDKLGKENCVVVSRPVGDTCPPTCDFLGNGCYAEQLEKIYPSVRPAGMQNLITEKNKIRAMIVDCEKKGNDLRWHERGDFYKNGSELDIEYVDNILWACRSILQEGGKLPKMWAYTXI*
Ga0078893_123725353F050996GGAGGMKRPTKKAFYEYMSKRFNIKYKSNDGYNALLDVIQVADKSEESFMDLAELTLMSSSDRLIYRNAMAEGGTEMTPAQVDQYLAIVEYGLEYVS*
Ga0078893_123725359F060890GAGGMNMQLNKHDYTMIADILDAHYEDTVDLQKNHYLNDDTDYFKQLEYLEELIDKVVYMIHEVEEPTT*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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