Scaffold Ga0078893_12216080

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_12216080
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4992
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013081	Metagenome / Metatranscriptome	274	N
F019630	Metagenome / Metatranscriptome	228	N
F030048	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1221608012	F013081	GAG	MQNKNVNNMDLIKLINTIRPEYHNRDFCINALPNEVTLISDTEQYLIEVSLKDDILETNFYQGEEIYKASDDEIDYIYNYLEQLLIDKIEETKQYYNEHNYNYQIWN*
Ga0078893_122160805	F030048	AGAAG	MLQEQLCKNQEKIAYRSCIDSYFSNGDRKDIMEYWLQLFEQKRFCEAKGVEKALELIDIYEELNAKD*
Ga0078893_122160806	F019630	N/A	MPKIKKKIHLKNCNYEHQQYCFKKGFIIYPVVSGNMYKVYCNRIKGNYYMKGKEFNKQESFQAIWDLYTKIYNYDINKIRD*