Scaffold Ga0078893_11558069

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_11558069
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2644
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F019643	Metagenome / Metatranscriptome	228	Y
F052546	Metagenome	142	Y
F065685	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_115580691	F000325	AGGAG	MKTAKGNDKLGKENCIVVSRPVGDTCPPTCDFLGNGCYAEQLEKIYPGVRPAGMQNLITEKNKIRAMLVNAEKKGNDLRWHERGDFYKNGSELDIEYIDNILWACRSIXXXYDPKLSRILGKYITMYASVHNHDDVKRAKAAGFELFAWCDSDEKIAPKRPRGKKKADQWRSDLPKLVVLGDDRYITCPEIRRGRGVVTCTKSKNSVNCQLCVQGLANVLFPSH*
Ga0078893_115580692	F019643	AGGAG	MAKYYIKTGTLQIIFSTDKEPYDACRVVIHECNSNDEVDEYMYVDERGYRDYTTADTTTYVVDTEQILRQEGYLK*
Ga0078893_115580694	F065685	AGGAG	MKPVVGIGSNTKFGRVLKILRDGVVVEDGQGRKETVSFRRVEKSLKGKG*
Ga0078893_115580696	F052546	GGAGG	MIILYKFYNTAAILILSMSCLYSGCAIIPNRNTITMNKTIELDERAIEKMNVGVRLEWIR