Scaffold Ga0078893_11131593

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_11131593
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28507
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (48.33%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011190	Metagenome / Metatranscriptome	294	Y
F042625	Metagenome / Metatranscriptome	158	Y
F065210	Metagenome / Metatranscriptome	128	Y
F068714	Metagenome	124	N
F070560	Metagenome / Metatranscriptome	123	N
F078539	Metagenome	116	Y
F091752	Metagenome / Metatranscriptome	107	N
F098044	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1113159310	F070560	N/A	MLMTNQTQQFKQLVSSAKPEAQIPKAESMVTVSSLMTTADHAQFSKGLSSIFVDVPHHVSGESQIFSVRPQQMVPRSAVIQRDESSQLVGISAVSGG*
Ga0078893_1113159311	F068714	N/A	MKILEKNKSHIIYKEDNGIVSIVPNTPYFHMKVVEWKNERIKFDLPIEGIEVLETFNGMIFNISLNGKTITTRPNMADEVVRSFTDTSKLYEIFDKYNNNKYNIQLLKGVLEKHGDRISIVPAGFVIDDIFLVDRTGVCWIWDSDKKEADKSHRTNLGSGAVCIVVDKTQRLRLKTSSGLVEIDEMGYIILSKIEFLMDPDLSDTVFTHQVPKKLLTILERNKEKNI*
Ga0078893_1113159344	F065210	GAG	MEITKSQFKSFEGIHELIITHSPHIRSIDIAQHIIDIQNEVTMLKNIIEDMRQKEKKKEAVIDNTR*
Ga0078893_1113159350	F042625	AGGAGG	MTPKAEKDALWKDLKLQWSFLKRDSGADEVKKGEAKKRINEIQESLKLEKTNWDAPRQGAPGSHLTNAGASPTPSNNALVEKILGTLLDMKRELNEDHASLSQKLNSLEEKVNSCACNCAKGETS*
Ga0078893_1113159352	F098044	N/A	MQSTTSTNSQAVLGINTSYDSMLAIESLILSNPMMNELRDIAKLTKTTLCKMALMEFLSTPVSSRKLKRLFNAARDDDKFRAVIQGGQLE*
Ga0078893_1113159354	F078539	N/A	MIKPLTDRENFIVASVIMVVSSEMKKVDRKTRQNILQFIREERYPGVTDQDWKEVAAGIDNHKKDVFGLMVKMFHETQSTPDMFAKKSIAELDTSMKGEIDDIDFDELKEIVDASDDPKLREYYLTMKQLKRDFDDERG*
Ga0078893_1113159357	F091752	N/A	MSQILEEQIEFMPENIYWLGLGNKYLEGQYEIIDNWGEKGLNKAPSFDTNFQTEYDFVLDNMKLRG*
Ga0078893_111315936	F011190	N/A	MCKIIMNFLKGIKKSFSGKDYLREINQCHYCGKPSFFSTCLMCETNDAYEGWEKK*