Scaffold Ga0078893_10960358

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10960358
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14380
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (15.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010314	Metagenome / Metatranscriptome	305	Y
F073501	Metagenome	120	Y
F076625	Metagenome	118	N
F096244	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1096035820	F096244	N/A	MNIQLEFIKGFLFGVDYLEDIEHSSFEEGDIMFDLLRISLGIVFIHIPLNVRDSQ*
Ga0078893_1096035823	F076625	N/A	MTENKIKILSEYLSRQNNMTWKEKKAFNDVVEHCTALDNHYKDKTIHLERLASWYVDHMFELNQDYIEEVSYEFVKHMLIDKLCFVLNTPSKYNYRSLENNIMALDIANNNKLKSYGSIPEAIKLFVKDAIVYNTKDEYEPT*
Ga0078893_1096035832	F010314	N/A	MEQFKVYCLNVIALGFTITDINPYLQMISLLLAIAYTVIQISKKLK*
Ga0078893_109603589	F073501	AGGAG	MPSKKSRIPESVINLDASKWCMDRGYKIYPIPVEFKDAKYGNKLGVKFKLMVEFGGDKRIGERLYTQKEWPIAIWSIYNFLYNKHNG*