Scaffold Ga0078893_10839999

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10839999
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7751
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010091	Metagenome / Metatranscriptome	308	Y
F014085	Metagenome / Metatranscriptome	266	Y
F022423	Metagenome / Metatranscriptome	214	Y
F025614	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1083999914	F010091	N/A	MSIMTTMDIDELLYEAENGKRSAILTRITPEAQPFWDGCEERVKNGTPIKPYVVSRLLKEHFNIKISESAVRHHFENIATHG*
Ga0078893_108399993	F014085	N/A	MNGLSEIREEAMQRANNQCEWAYCNDNKWLELAHIQGIGMGGNKKRKFDINNVAILCKHHHDIYDGRQRVGTSVAYRDLLKGFLKREQTI*
Ga0078893_108399995	F025614	GGAG	LSGNKPFDVNRVNIFTHPKYMKVWAQQFNKACGSDTFKVKPDMAKLRFLMDKFVTDYNYHLEQLEGEEE*
Ga0078893_108399999	F022423	N/A	MQDLQFIMTTINNMTESVQNTETLHKIIGTANQYAMTMKFPLDKTQWSDEQLNKYFAMIERLVEMPVEYTQGDFESMNLLEKLESAGIKTTEIEPGLQESGDMLGDIVNKMEEQNKYRDDLKCPCPNQLMVWDNRRTKKSDKSPDFTCSGKTPMECPMHTGKWRKSWWLDNSDIPKEWNV