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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005837 Open in IMG/M |
| Scaffold ID | Ga0078893_10648241 Open in IMG/M |
| Source Dataset Name | Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Australian Centre for Ecogenomics |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18916 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (82.61%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Port Hacking, Australia | |||||||
| Coordinates | Lat. (o) | -34.1192 | Long. (o) | 151.2267 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F049214 | Metagenome / Metatranscriptome | 147 | N |
| F083393 | Metagenome / Metatranscriptome | 113 | Y |
| F106168 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0078893_106482415 | F049214 | GAG | MANLNQGYRSGNAFGRLANVSYDNGIGGEDVALKPGYLLRIRDTYALVTGVEAMSVDLFFTDTLNVGITAVSSNVATDFDGTHGEALEQYGLASISAYYDLGTTTVDEADKTGNILAPDYDSGYITFKALEPYAGNLYHLCPTLPLQPKFMDAESGDWHSKNAFPPYDTSSGGLPIGFKGDGTAEHLLQVGSVSAKLYLKQPSGVAKHTLDEASDGESARATASETSLEGISGFLDGEMSPTVNPNWTFGMIIEHGEASLPAFRLVNDSDEYILDGRVRLVGWKYKILELSQEQLATLKAKAGGRLRFMYYNPVTYQSSGFLSDYLAM* |
| Ga0078893_106482417 | F083393 | GGAG | MLNKVFKMADKHPIITLGVGTLGIMYLFEQYGPVNGLGNVYKDSGTPADDMFRKTGHTGAPAPGTGRWDTVMPSPSGPQVRYDADYHTQPFMMDPELEKMLAERGPRPVRQPTSVRHGYEPTIFAGMKNVKMW* |
| Ga0078893_106482419 | F106168 | GAGG | MKIKTKVKRFYNRNKALSLGLAAVGAYYLYTQRGMMAPALAPAPVKAQTAMAPTARYAYDAYPPVRNEPYYNSTHFFGPADGDPVFYGF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |