Scaffold Ga0078893_10627861

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10627861
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3205
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007611	Metagenome / Metatranscriptome	348	Y
F040180	Metagenome	162	Y
F070651	Metagenome / Metatranscriptome	123	N
F087771	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1062786110	F040180	GGA	MSTEIRSAREAMTLFKILGVKEITTERQRKNGTQVFELPIQQMWQSLTPKPLRFATYKAGYVRNVSEYNSSPYQINK
Ga0078893_106278613	F087771	N/A	MKNENIKLLVQLEELLKHHDWYYGMSDDHYYYTKGREQSEKIQQTMEKLNNKNCSVMARELYDKYYK*
Ga0078893_106278614	F070651	GAG	MINTINNMKITIQQTGKTYVDQGDEVKVIHNHDSIIKIAGEYYKNKLTNEWISEDEYYDSLCLKFEEDESNKYY*
Ga0078893_106278617	F007611	AGG	MKKKTITVLDYEVGRVFQYRVKINIHSEEFIQFKGHRLKDVEWMEHQISNIITT*