Scaffold Ga0078893

Basic Information
Taxon OID	3300005837 Open in IMG/M
Scaffold ID	Ga0078893_10602109 Open in IMG/M
Source Dataset Name	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Australian Centre for Ecogenomics
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005837 Open in IMG/M

Scaffold ID

Ga0078893_10602109 Open in IMG/M

Source Dataset Name

Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Australian Centre for Ecogenomics

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	69986
Total Scaffold Genes	85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	58 (68.24%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

69986

Total Scaffold Genes

85 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

58 (68.24%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location Name	Port Hacking, Australia
Coordinates	Lat. (^o)	-34.1192	Long. (^o)	151.2267	Alt. (m)	Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Port Hacking, Australia

Coordinates

Lat. (^o)

-34.1192

Long. (^o)

151.2267

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026009	Metagenome / Metatranscriptome	199	Y
F049214	Metagenome / Metatranscriptome	147	N
F075433	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1060210967	F026009	GGAGG	MGSLGGLDVAFGSQMQLVRTNVLVIETDGTTTKAMAEMVHSIAAQKYPAALRPDFTAFVADGALTEGYATVLTDQVEGNVLKDITAVPMAGSTYGSTSDSRGMSWEAILNVGMAQINANDTLTADDLFTDASPAGIESDEMQGFSHALQAQLMAAQFASDQTGLAGNHGVSTLSLSPLLTDSVLLGGTAVTTAMDSLTESTTAAELNDAIAGAGAMVSILAIGKTF*
Ga0078893_1060210968	F049214	AGG	MANANQGNRSGNAFGRVANTDYTVMGTGESLKPGYLLRIRDTYALVTGVEALAVDLFFTDTVNVGSADANTLNGNDATALTQYGADSIQAYYDLGASATAANKTGNILTPSYDSGYITFSKLEPFAGNIYHLTPGLPLQPKFMDLSTGEWHSISNETPQDGGTPIGFKGEGSSPNMVQVGSVSGKLYIKQPVGANKHTLDESPDGESASGSTASETTLEGISGFIDGSMSPATNPNWNYGMIIEHGEASQPAFRFVNDSDEYLIDGRIRLVGWKYKILELSQDQLASLKARAGGRLRFMYYNPVTYQSSGFLSDYLSM*
Ga0078893_1060210979	F075433	AGG	MTDEIIMAKVSAFAEELRQLGVEDFIFAAGSSDGSLALQYDGDARGVAFLAMTTLMNAMFEAIEEQDMRLKYGREDNGE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0078893_10602109

Overview

Ecosystem & Geography

Associated Families

Sequences