Scaffold Ga0078893_10565950

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10565950
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6747
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000983	Metagenome / Metatranscriptome	814	Y
F064879	Metagenome	128	N
F105865	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_105659504	F000983	N/A	MKSYHILDCDKQQKIADSLYGYYVGITANREPKDFWNHLSRKEIQDYFSIPNNPCKEWFDSLGLKVRDMSFTIYNEDIGTDIHRDEPPVIAKINFPVLNTKDTYNVWFDDYANEIDRVECDKPIVLRSDILHTVEIGKDAVFPRIQFSFCFYNEPLQLLKSDTQ*
Ga0078893_105659507	F105865	AGGAG	MKITKKKIGLGVAVIIALGILWTVLKPAPAEAADVDFTFGAEKKIEANTNKMYLDSSVDLPLGITGTSGVNYSVDNSLDATFDSFELDFSKGLNEKVSVYSQSDFDVNLDHTDTTIGFKFKF*
Ga0078893_105659509	F064879	N/A	MKLKEYIKWANNLDEYQDSATLADLNAWGFEVMPGSYRIPKLNLDNATKGTEGYDSIRNDLISNWAKITFPFLKCLDAKIQIQRPGESCKPHLDFLGDYLQNVCESMPGLLNVEHTLEKPGIDVWRMFVAVEDHVDGHIFAVNNKEWKWTKGQCMRLNNWQALHWTKNDSDQDRVIIKITGIK*