Scaffold Ga0078893_10391776

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10391776
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13857
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040106	Metagenome / Metatranscriptome	162	N
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F052547	Metagenome / Metatranscriptome	142	N
F077304	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1039177613	F042905	GAGG	MIRLNDTYAGYYTYDKDHSPSNVDFLRTEINLDILHGCDQMCPGCFIPRKNLTNADHLKDLYELLVNGSYHPDEIVIGPTDIFDAQNFEEIMNHEYMFKLYEISAIGFTSTLLQPYWVIKSKLEKIWSLYAHIKRIPDIDFKIVLDVDKYLDGELDDWYKKLKLFVNGSVQFRVNYYKGVFDRISYNELCQKAYDDFHAPVVITPSFLTDRNARGKVEQHLANFRKDMLEQKIDDKWKEYYTFFDAKFNGYGCQNYSFYNGKLYVNPFLYDAIIQRTPFFETTMDENKLYDNIEYAQQVDDCNGCEYMMSCAERNVHMYMESRDLNSCVAIKEYMYATH*
Ga0078893_1039177614	F042906	GAG	MPLIKNNLYYELTTETQTKPVSAVKIQMDVLDGCHHKCPGCFVHRRGNASNIDQLAQAKEFVKNITDRGILVDEVLIGPTDFLASENFYEVMPELEDMINDNSPILAFVSTLIDGDIVQFCDWITERINLDTEIEIGIAINPHKFSEQTYLQNIKDKLWYIDRNLMHEVTYTFVVNIRDYGLDYTVLHDKAVKEFSTILDFIPSVSRSHKPNIILSTLSKFNEYFNEISKDTKLNNIMVDHSHAGMNYTVLNYKRGDWYLSPFMYENMAIYDDSLKVESFDDVVPITESQINRAKGTECEDCPLFFSCYNRKIILLRDYLGVKHCIAPKENMLNNIHNYNAPAQTMYQWDGYSVENDKRGYRKKFLVTEDNDPELERIKNISYVK*
Ga0078893_1039177616	F052547	GAGG	MGIVTDNKSHAQADKDFDLSFSEGHEIKVQFNCEILSGCEFKCKGCFVNKLGSNVGDFQRLNDAIDLFNENGYRVSTINIGPTDIFGNNNVLELLQDEIFRECLSKVTTIQFVTTLSEQIDLRVIDLLNSIPKKEGFMYDCNVVVEHPIVWGSLQSRLNMLNLFEDDLNYYFVYNMGNDDEDNEKVLDLSKVTDRYFDTILQLNPSFFRAPKSKVQKHMIEKWKSYDFSHDMYPKTIADQAQGGSLELNFTYCNERFFWTPFVYDIVMIGTDEFEVKEEWNINSWTKVKEDQFLNQLEYTAETEQCAMCPKQMTCIDKGVISYMKHHALTSCVFPDFIRSM*
Ga0078893_1039177617	F077304	AGG	MSESITTRKCCLTNFDFTKVLLEKKRPNIGEIELTLFENCHLNCAFCHHDKKSTVGLSREGMFSKIPLVEDHLKKMQGMVKTCQINMVGGELFQDRISDWAYDVYYDMLIEIKKLYDKYEQEIKVVWVTSFQFSKRDKVQKLLDDLNEADIPSYIICSYDFDGRPVRGPYGKNIEYFADYITSINMVATVPSIERFMKDDDEYFHYLYSKFDNFYFDDYIPDKGFDHLIPSDSLYLDFLTFIFHNYPDINPISDLIKNENNHMHCMALNKVTIFPNNSISNCRWDRYTKSDFNTPLNRQDNASMMQAYMDEHGCLSCKWWDKCGFRCYTQWDWKNRERDLPDCVMRMWFNYMDRIKSGKTQLVSA*
Ga0078893_103917769	F040106	GAGG	MTMQKSYCKQMRYSGPESLAPSDAYKFDVLIQMEVLAGCDHGCLGCFVDKNIDPNMNQMIIDRAKELADGVKRTGLNLREFVIGPTDFFTAENTESVLNNPVVQEIMREHTGARIAAPAKFDKVSMEKLRHIFSILDDEDKYRREMIIEFIMPIGRINEMLEDNEYYEEVMKKVDFFRNSTPKQMDWSWTLQASNVVGKQIDKNIYNRIIERSVNDYETIVEMNPAFSRARNQFVKRKNLFAWNDFLGRVIDENNANETVMSMANLYCNSINFVGLTIVPGEEGPTTHLNVMLHEQAFFLDNKNLDVTGLSFEEILQRKNELVTKGINKSSKVKDCSDCQFAVACASRLVFEAQESLNVNGCVMNKDVLDLYNPYDFTWNDDAERAMA*