Scaffold Ga0078893_10352621

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10352621
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14647
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (71.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059457	Metagenome	134	Y
F089161	Metagenome	109	N
F091013	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1035262118	F059457	AGGGGG	MNKLPKIGNTELYTVRVLNMSVAQYYGVVKEYNEIVVATRELNKKELEKSGDKGELNLYYSVRYNLNKLVLEKLKGEK*
Ga0078893_1035262122	F091013	N/A	MKIKNEISLNSFVIHCKETKYYNVNIKARNYEEAEKRWKNIAKRRDYLTLHNELEVISISEE*
Ga0078893_1035262126	F089161	AGGAG	MSDKYNLEEELNQRELEQDKEKETAMFKHLADIGVMDKLVFALNEYIIKFGRTSNVHDQCFDLKLQVLENKKHLQEWIDKI*