Scaffold Ga0078893_10327682

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10327682
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 159391
• Total Scaffold Genes: 186
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 158 (84.95%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002688	Metagenome / Metatranscriptome	536	Y
F004712	Metagenome / Metatranscriptome	427	Y
F025393	Metagenome / Metatranscriptome	202	Y
F038865	Metagenome / Metatranscriptome	165	Y
F040106	Metagenome / Metatranscriptome	162	N
F048753	Metagenome / Metatranscriptome	147	N
F077304	Metagenome / Metatranscriptome	117	N
F094928	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_10327682182	F048753	N/A	MIGEQHLEISAQVVQKLGFYMFVVMTSLILICIAFGFYAVIQKFNEPNWKEACIAQGGVPVQLEKSYFDCKGI*
Ga0078893_1032768229	F038865	AGG	MAVDIVKLAPESFQTIYLRKEDRIILRTEQGRKIIIKRIIPEEWREWKVYDQELAENENKKEIFLIDKSYLPLITKEFARKIKDR*
Ga0078893_1032768246	F004712	AGG	MTITTIVTSQAPDAKPVAKSFTLSTNWQTMIEVPNYEVPELVFGGSTTVEPGVGEVISPLILCNFTANTVMVDVRTYRYEDNDTFWIIRNLQIPAYDTIPLPLNGQFFKSGDLLELKTDTNLAVDASLSFTLGQSEEDDV*
Ga0078893_1032768255	F094928	GAGG	MTMDRGDVNSWVQSYGGAQLRTFDRTVRWRVNAYVRATSGAWSYTTGANYYHRFEYVNASNSIYNNYVDSGINSGNIIYPQDIVDTMEDLTRRTVDVIEGRISNRSTNAYFCHASCHSSCHSSRGRR*
Ga0078893_1032768256	F040106	GAGG	MSMQKSYCRQMKYSGPDMLPPSNAYKYDILIQMEVLSGCEQACLGCFVDKNIDASMNQQIIDRAKELADGVKRTGMNLREFVIGPTDIFSASNTERVLNNPVVHDIMREHEHARIAAPAKFDVATMERVQEIFDILDDEDKFRREMIIEFIMPIGKIDQMLNDIVYHQEVMRKVKFFKENTPKQMDWSWTLQASNVVGKKIDKETYNKILKRSVRDYETIVEMNPAFSRARNQLIQRSNLMGWNNWLGNVIDESNHNEAVMSMANLYCNSINFMGITIVPGKDGPTTHLNVNLYEQAFFLENKNLDVTGLSFEEILDRKDELATKGINKSTQVKDCNGCEYAVACANRLIFEAQDTLNINGCVLNKDVLDHYNPYDFTWNDDALKKLGEAS*
Ga0078893_1032768265	F077304	GAGG	LVAKFPNGSLIMTDRQRNSGLVNPADPEADAVTKIILEDKRPDIGEIELTLFENCHLNCFFCHHDKQSTVGLSREEIFSKLTLVEDHLIKMKGRADVVQINMVGGELFQDRISEWAYPVYYDFLIEIKKLYDKYDHNIKVVWVTSFQFVKRDRVQKLIDDLNAADIPSYIICSYDFDGRPVKGPYGKNIEYFADYITSINMVATVPSIEKFMEDKDEYFHYLYEKFDNFYFDDYIPDKGFDHLIPSDSLYLEFLKFVYHNYPDINPMKDLISKDKNHMHCLSLNKVTIFPDNSTSNCRWDRYTPEDFNTPLHRKDNASMMQAYMNEHGCLSCRWWDKCGFRCYTQWDWKNRERDLPDCIMRMWFNYMEKDKL*
Ga0078893_1032768289	F025393	AGGA	MKSQYEYRVQYEQQYVQEETIPALNTPEDCHKYAMFVKGNEHFDNGRTYVFKDEFGKYVSTFVSQYSDIMEKNLEPGVKDAVLALQAKGYLTFTSCQGHADSKHRYIGVVFNTKAQKGQFIRDMKDLRCDIHWYDNTINSVERPCRTIPWWSEGGITLHIVYDDHNFDNASQMERREKPYTDEELTKFWNIQMWRNYKHYECIVFSFGYPMVEKSLWERIHKYFFYNHYKVTSAYNDFLNKIHKLSDYLA*
Ga0078893_1032768290	F002688	AGGA	MDQEPYHNKGVGLAFLIIAFTMIGIPVIIGQSMGWFNLFGILGL*