Scaffold Ga0078893_10276466

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10276466
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21229
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005352	Metagenome / Metatranscriptome	403	Y
F005796	Metagenome / Metatranscriptome	390	Y
F047922	Metagenome / Metatranscriptome	149	Y
F060355	Metagenome / Metatranscriptome	133	Y
F084734	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1027646612	F005352	AGGA	MINPATEKPYMVLVCNPYEHSTSINTRVTMEVMQKDLSRDDMIQVCEDFMKAIGYSFSSKECLDVMVTD*
Ga0078893_1027646625	F005796	GGAG	MLLEIAVVIFCMIGCGMTSYHLGKQEGIETTIEHLVDQGMLNVEEE*
Ga0078893_1027646626	F084734	N/A	MKKYKRKPWTDEERKTLAEYYTKLDIEDLMYLLPDRSAGAIKNQVAYLRKRGYRIK*
Ga0078893_1027646631	F047922	GAGG	MTPQEIYDHKRKWLMASYFKSHTHSDIRSDVKDWLKSNCFKHRYDLKTFTDIYGDTVRFELEEDFTAFNEWYKERING*
Ga0078893_1027646648	F060355	GGAG	MKLKDDIQDKWDSGWTIYDIADHYHCTVENILQILGIVENPFSYELH*