Scaffold Ga0078893_10250250

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10250250
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8711
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (68.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005751	Metagenome / Metatranscriptome	391	Y
F042374	Metagenome	158	Y
F065673	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_102502503	F065673	AGGAG	MSDRLVEDDEVSVDETKQQAIAKHYSDMKVMSNLIDAIDAYIIRFGRTSNVHDDCFDLKLQLIKNRNHLQDWVDKI*
Ga0078893_102502505	F005751	AGGA	MSDIYTIDFEPSKLSHRQEELGLEFADLDTAVELMKKEEKMIVAELTLYFSKNGGYKNMTELNGYIYSDNKFKDYFDRYERTLKERNRAKIRFESFKAFRDDLRTKVVNERELAKNL*
Ga0078893_102502508	F042374	GGAG	MKNTKLIFTLLTATFIGGCSTMPIVDSRGKSSANIKGDMNRFHDDYYTCKSLVKDQTNYGWDIGKNIYNTLRFKVLWLSPKLDTRKDYINRCLEGRGYNVINK*