Scaffold Ga0078893_10248519

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10248519
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4406
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014147	Metagenome / Metatranscriptome	265	N
F051922	Metagenome / Metatranscriptome	143	N
F070126	Metagenome / Metatranscriptome	123	N
F080086	Metagenome / Metatranscriptome	115	N
F104988	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1024851910	F051922	N/A	MKRLSLYERLNPDVKAKLIANQLDYEFTVGMVITKLDSTLFWDELTVRDISNLVVFSDSDMPIDTTTMLRGDANLIQPQNEII*
Ga0078893_102485192	F070126	AGG	MRIYQLYTYCREVIEKYPELRDEVMQHFALAQMECEDDASSEEHEVELSLTDINELVAEHEIKLQK*
Ga0078893_102485197	F080086	N/A	MTIITAIEVSIEALENECRAHDFTFMENPWRQRHWSDEYDRRAKIFTLLERLGHSSKAIEVYNTYAPDFAKRPLSSSYY*
Ga0078893_102485198	F104988	N/A	MFHEVIDPDFAFIDECETIADYMEEHLYDTVAWQMPYGVDMQEEDENYANEVHATAMNQVIAIMASRFFYKTNTNSER*
Ga0078893_102485199	F014147	N/A	MTTIKNTFEQQLHEKFGVKVMSMMGTSSAIVADGSNGTDYVDYYDTNPGWIFGVHPKLQAFIDASGWECEWENSEVLNLYPGHDWTGDFSEAQIVSYWNAMCDYIQAPQDHVYANDDEAFEMLQLTIRQTVAASKNDRYDFDDKWLTLDGYGNPMSFNSLVNYIDVPELEEYLIAHALI*