Scaffold Ga0078893_10246702

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10246702
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33163
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (80.77%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027807	Metagenome / Metatranscriptome	193	Y
F034404	Metagenome	175	N
F040054	Metagenome	162	N
F048234	Metagenome	148	N
F066271	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1024670215	F034404	GGGGG	MLQTVTIDWRPVEQGSMPRHEGNYLVAFDDGAVETFPMSDQDIKRGEVRDGQTHGLLWAEGIPSPLDNGED*
Ga0078893_1024670219	F066271	AGGAGG	MCVQSQRQYFGERHHIVVTDRIAELLNRLGRDKGVTEEEYLKRLSRHPNEDYFIAEIARHYG*
Ga0078893_1024670221	F040054	GAGG	VIEKMPIISMPLPDGGQVVCRVDAITAATTNTRNDDMTDVYIDVACPEGITIDVDIESFTTSWLAALLTTIDDWRLDREMH*
Ga0078893_1024670232	F027807	GAGG	MSSKEFVAPKPIKSDIIEELDSLVGQLRDLTAMKPKHAQDAHMDARLADFLELAEQDFIRGWTDWEEGIQHKKGQSEAYNAGYADCYEYENRGGQ*
Ga0078893_1024670233	F048234	GGAG	MQIAIKISKQVNDWDAFVDELEGIERTAVADEYDEEAKVVTLLVDRESIDDYYHPVGGRYPIEFEGRTEWVEEVGVCVHSCKWHDHNIINAEQVCAKLEGLDYVE*