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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005837 Open in IMG/M |
| Scaffold ID | Ga0078893_10218294 Open in IMG/M |
| Source Dataset Name | Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Australian Centre for Ecogenomics |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 57607 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (88.57%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Port Hacking, Australia | |||||||
| Coordinates | Lat. (o) | -34.1192 | Long. (o) | 151.2267 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004712 | Metagenome / Metatranscriptome | 427 | Y |
| F013640 | Metagenome / Metatranscriptome | 269 | Y |
| F042922 | Metagenome / Metatranscriptome | 157 | N |
| F048351 | Metagenome / Metatranscriptome | 148 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0078893_1021829419 | F013640 | AGGA | MAVDDIILAPESFRTIYLRREDRVIMRTERGQKIIVKRIIPEDWVPYRIFDHETQLNNNKKEIFLFDDVYLGQITQELSNSVSE* |
| Ga0078893_102182943 | F042922 | N/A | MASRANIYIDKGLDFRTELNLFNDEGVEYDDATISVYSFYSSIKKVYSQSAAVNFNIEVSNNDITLVLTDQQTDTLTPGKYQYDVVMQKQTGERTKIVEGLAIVVDTITEVS* |
| Ga0078893_102182945 | F004712 | GGA | MTVQTITTSQAPDAKPVAVNKIVSTNWQILADVPQYKVPELVFGGSETVEPGVGEIISPLVLCNITASTVLIDLRFHREDVNAEFYVLRNMPLPAYETIPIPLNGQFLKSGDTLEIMADTDLAVHATISFTQGQSEEDDVV* |
| Ga0078893_102182948 | F048351 | AGGA | MATINRDKTTGAILNTDAAALNKYKVERSFYRKVDRIQTDLLDIKQSILDIYQRIEKLEEK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |