Scaffold Ga0078893_10079816

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10079816
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 92984
• Total Scaffold Genes: 110
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (14.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y
F020206	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1007981610	F020206	N/A	MALDIKRQNKTYEFSNSSVSKILASKAVGTDILARDHADDAAAKAAGLAKGDLYHTAGALKIVVS*
Ga0078893_1007981621	F006666	N/A	VNPKSHKDFKEGIADEVGVHPSVVEDFITFYYGKLRKKLSALEFPRINVDGLGTFYLRKNKLEKSIKKNKSVLGNLAKRTYVGFAKSEEIQKNVTMMENALKQMEQDILNKKKFRNEK*
Ga0078893_1007981622	F004866	GAG	MAIVNKVDLKMQVDIDVSIKYQILTYCFFNDILISNSDLKFLAELSKNSGIELTKFCLAIVEKGIFKSPQSARNAITKAEKKNLLSKKGNNKKTISLNNDLNVQINGLVLLDYKILGSESKES*
Ga0078893_1007981624	F005243	N/A	MADLKTNSELSDKNPELSKEELAQRREEITAFYKDNIPHLTVQAEYEALLADIEKSRAERMQAQMFMAQQYAAQKQAEQPSTPEAEAFKEAMNEAVKAE*
Ga0078893_1007981660	F002047	N/A	MKQGVSLAINNDADKNKLVEQKYLQFEDGKYTLTADAKMLIARMDNYFIKAKKKTDIQLMGKDFVDKINDYREIFPAKKLPSGKLARNNVKALGEAFRWFFETYDHTWDDVINATRMYVNEYRDKEYMYMQTSQYFICKQDKHRVKHSTLADYCDMMIEGINTEQEHFKENVV*