Scaffold Ga0078893_10078894

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10078894
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33932
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (80.95%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003074	Metagenome / Metatranscriptome	509	Y
F036713	Metagenome / Metatranscriptome	169	Y
F067765	Metagenome / Metatranscriptome	125	N
F074686	Metagenome / Metatranscriptome	119	Y
F076126	Metagenome / Metatranscriptome	118	Y
F078667	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1007889419	F036713	N/A	MGVFLGTYNGHDLGMEDDGRIYACFAANNPFGLTNCSSFKTERAAYHYINDMFPPRKQRNLQIGEVETETEFPTVVDLIKSGYSDQTFDMIDGLVAEGSQLIH*
Ga0078893_1007889426	F067765	AGGA	MPTNNKDNLIHFPKIHSNPPIDENSVSERIREYKESYSTELAEIIWENVLGEMARAGCEFDSDFETYFPSMILIFEAIRSLHLQTMGEEHQLQPFALQNVVIMDSNEERVAGGLKKNLEETIDIDEDL*
Ga0078893_1007889428	F078667	GAG	MIALTDKLQNLPTPNIINLTECKDRRSWTESEFSRHGLDDIRVHQYDRYVEGESIPFVGDPEVVNTTTKGVTSSHLLTIKWWLENTDEEYGLFFEDDLDYEPLQYWNFTLKEYIDKCNQWDWGALQMCNVFEYPYDYKNEYIPFVPKKREMWDHGLQAYAIQRWYAEKLVEYYFGDFEGKIHYRMPLGSPVTTENNILHGFGLVISFPLFNHNITDFRSKNIYFYNEQAKAAVYSYEFIDLWWESKGIYLSLDEVFKNEREADKIYGVLE*
Ga0078893_1007889443	F074686	AGGA	MKSDYVVVDTISVFKQRYIIPREEVQRLNEEVHCTDKLAKLWAQECVEAEEVKEFSQRWLGETVTNVDIVDTLKALKYFKDDNEQLSEEWSQAKQLDFINDWKDKTPQR*
Ga0078893_1007889445	F003074	AGAAGG	MTKSTEEKILQAVNLSPSESWVERIVEVHPMKQVAYASVLQLLVFGSMLFSFFLIDHFV*
Ga0078893_1007889462	F076126	N/A	MPTYDKVLELAEVLKIDSDNTIKKVTLNIKTYDIAVGSSIYSVQPMVAVLSADDFANSAIEKVSTANTAVDIALWGYEYAGGDTYYDNTIKDNAESQVANLIQFQGTSAVDITTLT*