Scaffold Ga0078893_10059131

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10059131
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 85300
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (78.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004712	Metagenome / Metatranscriptome	427	Y
F038865	Metagenome / Metatranscriptome	165	Y
F040106	Metagenome / Metatranscriptome	162	N
F077304	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1005913132	F038865	AGG	MAVDIVKLAPESFRTIYLRKEDRVILRTEQGRKIIIKRIIPDEWKEWKVYDQELALNENKKEIFLIDNTYLPIITKEFARKIRT*
Ga0078893_1005913153	F004712	AGG	MTINTISTSQAPDAKPVAKSFTLSTNWQIMIEVPNYLVPELVFGGTDVVEPGVGEVISPLILCNHSANTVLVDVRAYRYAETDFFWIIRNLQIPAYDTIPLPLNGQFFKTGDLMEIKCDTNLACDATLSFTLGQSEEDDV*
Ga0078893_1005913164	F040106	GGA	MTMQKSYCKQMRYSGPESLAPRDQDKFDVLIQMEVLSGCEQACLGCFVDKNIDPAMNQQIIDRAKELADGVKRTGLNLREFVIGPTDFFTASNTESVLNNETVQEIMREHTGARIAAPAKFDVATMERVQEIFNILDDEDKFRREMIIEFIMPISKVDQMLDDIVYYEEVMRKVKFFKENTPKQMDWSWTLQASNVVGKKIDKETYNRIIQKSVNEYETIVEMNPAFSRANSQLVQRKNLFGWNEFLGRVVDEGNYNETVMSMANLYCNSINFVGITIVPGENGPTTHLNVMLHEQAFFLKNKNLDVTGLTFEEILDRKHELVTKGINRSSKVKDCNGCQFAVACANRLIFEAQESLNIDGCVLNKDVLDHYNPFDFTWNDDALKKLGEAS*
Ga0078893_1005913173	F077304	AGGA	VQTKFTYGNVITTDRQRELVNPVDADADAMTKIILEDKRPDIGEIELTLFENCHLNCEFCHHDKQSTVGLSKEEIFSKLSLVEDHLIKMKGRAEVVQINMVGGELFQDRIADWAYPVYYDFLIAIKELYDKYDHNIKVVWVTSFQFIKREAVQKLIDDLNDADIPSYIICSYDFDGRPVKGPYGKNIEYFADYITSINMVATVPSIEKFMADEDEYFHYLYEKFDNFYFDDYIPDKGFDHLIPSDSMYLEFLKFVYHNYPDINPIKDLIYKDKNHMHCLSLNKVTIFPDNTTSNCRWDRYTPEDFNTPLHRKDNASMMQAYMDEHGCLSCRWWDKCGFRCYTQWDWKNRERDLPDCIMRMWFNYMEKNKL*