Scaffold Ga0078893_10030701

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10030701
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2801
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012734	Metagenome / Metatranscriptome	278	Y
F024299	Metagenome / Metatranscriptome	206	Y
F082549	Metagenome / Metatranscriptome	113	N
F102574	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_100307011	F024299	AGGAG	MQQANNTKIKAVTTVEGEACATLHINLAAHNLQVNGRAVNSITMYADAECCGDLAVNWEEEDDSNYKHNTALLMRDIHDSNNNTETMGAFYWDGEFTSTLHTLLLENGFSTAAVEDVCTSEWGMQDVGRAS
Ga0078893_100307012	F082549	AGGAG	MTTYTGKNKTLLAYEATSDYAESNLSNEQKEKLLEIVNKYKFIDGNYSSTMIQGVGHAYCDSGILSDGWAVEDVNILSEYLRDKVASTVGSKNKYDIEDETSVFYETDIVHTVGDDIIEMHTDGKRKGMWDTLYIGEVNAMLGDDAAILESSEDALGYAWFLEAYMEDEHIKKSNKNEKK
Ga0078893_100307013	F012734	AGGAG	MTKIKDIAYGYWWNCAACGAENAYGLTQAEADDYIRDWEADNADEAEEDKETGESACDWWYNVTAEENDAHIEEGQACYSCAAVAAASTRTDKAKWFDSVVDNLENNS*
Ga0078893_100307014	F102574	AGGAG	MLTQLLNKLTHYFLHRAFAQMERAEQEGTVSTATDDVADFMDDYYTYFVRSDNDED*