Scaffold Ga0078893_10010818

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10010818
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23585
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042972	Metagenome / Metatranscriptome	157	N
F060052	Metagenome	133	Y
F067842	Metagenome / Metatranscriptome	125	Y
F105365	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1001081821	F105365	AGGAG	MLNYNLNNPTPFIKKYISKNNHIINKYTDLLFSDPTTTTSSQWNSLPPLTQKLAFELSLYKLENGSDFYL*
Ga0078893_1001081822	F060052	AGGAG	MSKLQQHYINFQSQPTIPHKILYLQKHQNELSQYNINVNNLIKSYTTNQWPWNQPKTDND
Ga0078893_1001081831	F067842	GGAG	MHEYQTCIYTQDRLTKSVTLSVVERGFSEKNSVDNAFDTFKCLALNLNEILKIETKGI*
Ga0078893_1001081832	F042972	AGG	MVKFDNIFYVGDTVETKHGLNKIVKIELMPEPRHFSKCGINVEKMFTNMKNYCIIDLDNKHFVYGDEVELCR*