Scaffold Ga0078893_10001486

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10001486
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29613
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092153	Metagenome / Metatranscriptome	107	N
F093944	Metagenome / Metatranscriptome	106	N
F095060	Metagenome / Metatranscriptome	105	N
F100546	Metagenome / Metatranscriptome	102	N
F100547	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1000148610	F093944	AGGAG	MDEAKVTSAILKHIENNFDTTELDGWRVEFEGIEDDDGNLSTPAQDQENGWSRFIVTKVDDGSEFYVIWDYPSKSISEFNEG*
Ga0078893_1000148623	F092153	N/A	MNTTLDQIIEINNGEPVIKENVPMEYYQKGIYQWWHDIYGCIYVGISAVDTENKNDGMPLRALHHARKLLSKEKGNTQPTKKWTNFSKKFLEGNHQLNEIKIVYENHPQKSKRDLEELEHRLIHKIKPICNA*
Ga0078893_1000148642	F100547	AGGAG	MKKIITLIYVLLPFPLFSASVTCGIDEGLIGGNFYDYSINLNTNELQLINVKEEFDFPAPVTVLLDEDFSQKAIWALEKSNGVINYKIDENTNFSLFISRYDYFDGRFSQKVGNHLIITNLYCDFDALDNSKTSF*
Ga0078893_100014867	F095060	AGGAG	MSFSYDHDIFEQMKMDEEKPKYFLQINNFDKSHVLKTAANQFLSDLPQKEERILRMLSGFGLHNQYDCKEIARQFNISEVEVIQIANQGFYKFTMSYFSYLKELRTH*
Ga0078893_100014868	F100546	N/A	MFKLLLSTILLFIFTKTVNAAALECDVDDYLIQNLSVITINSFDLEIKPLTSLDEIPPFISIKIDNHFSDWAQSSQLTGKPLKMNISPDIYFYLKPSGNGYMDGFYIIRNGDYVTKLDSYCSFNILSNYQSDFIHFDKEEPLDEL*