Scaffold Ga0074470_11691767

Overview

Basic Information

• Taxon OID: 3300005836
• Scaffold ID: Ga0074470_11691767
• Source Dataset Name: Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 103716
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (73.20%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Astoria, Oregon, USA
• Coordinates
  • Lat. (^o): 46.15968
  • Long. (^o): -123.80651
  • Depth (m): .06

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077818	Metagenome	117	Y
F102141	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074470_1169176771	F102141	GGAGG	MARTVDIPFGYGDVIAITGSGPKVVVWFKDSNSVVRGLLMDLSDPANPVLNREEIIIRRKTEGQVRAKKGKLPPVGNPVA*
Ga0074470_1169176791	F077818	GGA	VGFTRSYNDLQWLEMVRVWTTAHEPAMAEAWATAAQKVFDLRGGAGRNFLDDGGEYEIVVLFAIYNPPTDSPDFRKALGRRSGQTSLALNHSRERWAHRLSGTRATYLFVFRREDSVDGRWLGDMDGYEKLPEEAGVFGVSIYKRRM*