Scaffold Ga0074470_11488792

Overview

Basic Information

• Taxon OID: 3300005836
• Scaffold ID: Ga0074470_11488792
• Source Dataset Name: Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1523
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Astoria, Oregon, USA
• Coordinates
  • Lat. (^o): 46.15968
  • Long. (^o): -123.80651
  • Depth (m): .06

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009643	Metagenome / Metatranscriptome	315	Y
F012393	Metagenome / Metatranscriptome	281	Y
F026389	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074470_114887922	F009643	AGG	MSDTWKARLDGALGRGEVAGLYFTTALLVVVEFCFVCWLNRIPIPDVPTAGAGFIVLPPWYRKPRFEMTLLLTILAGLLFSVCWGLWDLWQQRNDTESWEKAIQSVKQRVRTATSVAALTGIELALVTYLRY*
Ga0074470_114887923	F012393	N/A	MADYRQVTTEDVLDAARRRRPLCDEVAVDDPVTAGKVLAAFEIRMEQRLDLGVVNRALNVFLEPRNPFEPERTRKPKREAVIFGTLVAVVAAAFLFFNLAAPRLQVYP*
Ga0074470_114887924	F026389	N/A	KVVGSSKNHQKVEIMLQDVYQKDGRVYLRYAIVNGGGTVYLPAAPEVFNLNSPRSSQSLIPLTNSQLAGDYQLKWKGEARVPVVHTELQAPVVRPGQTGHGVTTFDLPTPSEPGLRTVVKLAFPADAAGNVSAILVL*