Scaffold Ga0074470

Basic Information
Taxon OID	3300005836 Open in IMG/M
Scaffold ID	Ga0074470_11172170 Open in IMG/M
Source Dataset Name	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon Health and Science University (OHSU)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005836 Open in IMG/M

Scaffold ID

Ga0074470_11172170 Open in IMG/M

Source Dataset Name

Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon Health and Science University (OHSU)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	44849
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (63.89%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

44849

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (63.89%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Astoria, Oregon, USA
Coordinates	Lat. (^o)	46.15968	Long. (^o)	-123.80651	Alt. (m)	Depth (m)	.06
Location on Map

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Source Dataset Sampling Location

Location Name

Astoria, Oregon, USA

Coordinates

Lat. (^o)

46.15968

Long. (^o)

-123.80651

Alt. (m)

Depth (m)

.06

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000451	Metagenome / Metatranscriptome	1124	Y
F002261	Metagenome / Metatranscriptome	577	Y
F003186	Metagenome / Metatranscriptome	502	N
F007294	Metagenome / Metatranscriptome	353	Y
F023143	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074470_1117217016	F000451	N/A	MELFVVAAPPTAPPKVTMARFQTVIKRARFVYSPYIATEMQGFGQVLADSIRARIQSGQNIYDQAAAPLKPGHAGRRGYPDYKSARGLKPIRDWTWSGHTLRCLKVLTANENRAAIGFLDETFPGRRMTASQIAAFNNRREAQWGVSPRDRQAVHAAFQARPFVMTKAA*
Ga0074470_1117217022	F023143	AGGAG	MDSVYMRSPAGEVKEVEATAAALTPLMVAGWHQVPAPAASQKPAVPAEEEK*
Ga0074470_1117217023	F003186	N/A	MINPNTILGEWVAALQSCADLVTAIGGDSDNVRAFLEGLATDNNLRLAILKMPPGSILVAWNGTTPRRLSGGALHFAHRFSLYVRAAEQDSGGTYADLFWLLVSAIPTGAPSWSSLLHFQIDPDCYPMDLDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE*
Ga0074470_1117217024	F002261	N/A	MSDWSTIDAAANAVMQQTFGEPVVYQPMQGGAPAGGPVTVTVVRHARVLEESGAMANFEEISVNPADFQIPPAKGDWVTAWGAQYVVTTLRQPDAYGMIALTLLQRSS*
Ga0074470_1117217029	F007294	GGAG	VALTIQQLQANLDAVNQALGNPTLKVRFPDGREVTYRSGDDLRKAKAEIEEDIRQASGQTGSRVTFAQHKRGDGPTGPTLDDRW*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074470_11172170

Overview

Ecosystem & Geography

Associated Families

Sequences