Scaffold Ga0074470

Basic Information
Taxon OID	3300005836 Open in IMG/M
Scaffold ID	Ga0074470_10248396 Open in IMG/M
Source Dataset Name	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon Health and Science University (OHSU)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005836 Open in IMG/M

Scaffold ID

Ga0074470_10248396 Open in IMG/M

Source Dataset Name

Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon Health and Science University (OHSU)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	189200
Total Scaffold Genes	185 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	153 (82.70%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

189200

Total Scaffold Genes

185 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

153 (82.70%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Astoria, Oregon, USA
Coordinates	Lat. (^o)	46.15968	Long. (^o)	-123.80651	Alt. (m)	Depth (m)	.06
Location on Map

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Source Dataset Sampling Location

Location Name

Astoria, Oregon, USA

Coordinates

Lat. (^o)

46.15968

Long. (^o)

-123.80651

Alt. (m)

Depth (m)

.06

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015164	Metagenome / Metatranscriptome	257	N
F018824	Metagenome	233	N
F030769	Metagenome / Metatranscriptome	184	Y
F039845	Metagenome / Metatranscriptome	163	N
F040669	Metagenome	161	Y
F052134	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074470_10248396139	F015164	AGGAG	MGDRAYVEIVCREEDEPLFEALGFMEEFRHGLPASVVTLVDAEAPDGNSSELQALAEKGLVFRGWHDAGGAYDGACFASVGGKYHEVPRLNHSDLPCIEVHVDGTIDADQLLAACGYLKASEQAGEMLGFPAALEPEGEAP*
Ga0074470_10248396158	F030769	AGGAG	VAYGAFADTKSRYRDLDRLVDYREYDGAWTLGFEENWLKPRLKTLGYSHVRFFGGTTFEYDGSFRERVCELARSGSVSAEFFVYG*
Ga0074470_10248396160	F039845	GGA	MIVCVLSLGSYWREPNDGRPVVWNSSGVLDQRGLRPRAKVFGHVRLNSRLYQEALGTSGLSRSCWQASPLGEHLGIRKLILQRRVRRNSTPDWYLVSVTEQLVGTLDDESWDPKDSLLVSFSEWKARQEVLLLVGRHGWLRGRLGSAVLTPGGPDGDWNVKGW*
Ga0074470_10248396166	F018824	AGGAGG	MATSMEAPVAAKREKAPKRRGRRSRQTAPENVRFFVGKPCRNHEAPQLEREVASEAEGLVAAFKTDGSLFLLREYTVTQKIEGGRVTLEKEPATAASHRVSTVNAS*
Ga0074470_10248396167	F040669	GAGG	MTATTDANWAPLEARLSGDVEVIREFMWMFGDKDTNVEYYKHSITRRYLLLHRDGRCFQQSLNGLVEVDFCTDLRRVREHPEEGQ*
Ga0074470_1024839658	F052134	AGGA	MDLQPGDQVDIVFADAPGQSARATVSRFLSDQQEGLSPEAEDYVFCWLEISPEHQGTLAQSQTIVLGADWKYYIDGREVEIRKCSEPAS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074470_10248396

Overview

Ecosystem & Geography

Associated Families

Sequences