Scaffold Ga0078910_102575

Overview

Basic Information

• Taxon OID: 3300005835
• Scaffold ID: Ga0078910_102575
• Source Dataset Name: Biogas reactor microbial communities from SLU, Alnarp, Sweden - PacBio 1 to 3 kb reads
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7389
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Biogas Reactor → Biogas Reactor Microbial Communities

Source Dataset Sampling Location

• Location Name: Alnarp, Sweden
• Coordinates
  • Lat. (^o): 59.8152338
  • Long. (^o): 17.6620518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F009968	Metagenome / Metatranscriptome	310	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078910_10257515	F003987	N/A	MCAGGVGVIPALPCGTYSDGDTPAGAFYVAAFESGDQTHHVGEYRIETLVRALRALQACGYDDVEVGSIERDGKTHLLLIGLDGEARFGDRQLGCIAVAPVGVE*
Ga0078910_1025759	F009968	AGG	MRPNSCIGCRSHYRERHWWIFVIDFCGLDGDVVGFECPIGCIDTEGCSAYERRPAWPEGAIA*