Scaffold Ga0078910_102573

Overview

Basic Information

• Taxon OID: 3300005835
• Scaffold ID: Ga0078910_102573
• Source Dataset Name: Biogas reactor microbial communities from SLU, Alnarp, Sweden - PacBio 1 to 3 kb reads
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3931
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Biogas Reactor → Biogas Reactor Microbial Communities

Source Dataset Sampling Location

• Location Name: Alnarp, Sweden
• Coordinates
  • Lat. (^o): 59.8152338
  • Long. (^o): 17.6620518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y
F034940	Metagenome / Metatranscriptome	173	Y
F054061	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078910_1025733	F034940	GGA	MGNDCWYYRAQYAGMTKVCMWKSIVERGRIVRFGLCPVPPDSEEWRRCGFAIGQHEIPLMVEE*
Ga0078910_1025734	F054061	AGGAG	MDETFEIIKAGAPDGPPEQALYRIQQTYPDGSGGRLNIDWEGLLRLHELIHDRS*
Ga0078910_1025737	F004383	GGAG	MTDILERAFMARIRADEYREALAALQKEFDERPDVIDLKRRIDRCEEERRQCIEQAKAAGISKQGSFRLKVRTRKQRTVIPERFFARFGAETFVKCSTVAIGKAEALLGKGTFDDCCEVAVKDLGATVEYVRPGVSE*
Ga0078910_1025738	F003987	GGGGG	VIPALPCGTFSDSNTPAGAFYVAAFESGDQTHHVGEYRIETLVRALRALQACGYDDVEVGSIERDGKTHLLLIGLDGEARFGDRQLGCIAVAPVGVE*