Scaffold Ga0078910_102461

Overview

Basic Information

• Taxon OID: 3300005835
• Scaffold ID: Ga0078910_102461
• Source Dataset Name: Biogas reactor microbial communities from SLU, Alnarp, Sweden - PacBio 1 to 3 kb reads
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3112
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Biogas Reactor → Biogas Reactor Microbial Communities

Source Dataset Sampling Location

• Location Name: Alnarp, Sweden
• Coordinates
  • Lat. (^o): 59.8152338
  • Long. (^o): 17.6620518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078879	Metagenome / Metatranscriptome	116	N
F103501	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078910_1024613	F103501	AGGA	MVKNIILEGVVFFDDKYDLWCVGEDYIEDIISDFEDKKVLVTITEI*
Ga0078910_1024614	F078879	AGG	MTPDVSDEVKEGYDLLEGIGIVERTESGQYCPTEVGAAIIYTVLCKQILGAGADDFRSEELQKVMMNRLEEMDLVEQIDDSFIITIEGFTAFFTNLAYDCPHREEFLDWLALATAELAEEMEKL*