NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074469_10995909

Scaffold Ga0074469_10995909


Overview

Basic Information
Taxon OID3300005832 Open in IMG/M
Scaffold IDGa0074469_10995909 Open in IMG/M
Source Dataset NameMicrobial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon Health and Science University (OHSU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5000
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameIlwaco, Washington, USA
CoordinatesLat. (o)46.28551Long. (o)-124.05187Alt. (m)Depth (m).06
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009503Metagenome / Metatranscriptome317Y
F012655Metagenome / Metatranscriptome278Y
F014089Metagenome / Metatranscriptome266Y
F024931Metagenome204N
F025683Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0074469_1099590912F012655N/AQDPIDVYSLVSALATSGLGYLYEDAQGRIGYADSTHRTNYLAANGYVDLDANQARAAGLRIQTRVGDVRNAITIKYGASSQNDVSDSDPASIALYGNLAQIITTTLHDAADANAQAAFYLSLRANPQPIFSEISFDLQNPEIDNADRDALINIFMGEAISLNNLPLNMSSGTFQGFVEGWSFQAAYNRLSVTLLLSPLAYSLQAMRWNDVPITEKWNTVSPTLTWESATIVA*
Ga0074469_109959092F009503AGGAMDKVQFECRKCKKITVQLIHKITDNLPDGVEVIQCTKCEVMGVAQIGTSNANL*
Ga0074469_109959093F024931AGGMQLTREEEITCMLAAVKLAVDNNKFMDNPQRHQKELGTFEYLVESAEAIGSEWVVAKYFNLPFDPYENKFKVKADVGNAIEVRWTKYVTGQLIVHEYDRPTDIAVLVTGQSPHYFIAGWIPVAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSNYGQSAI*
Ga0074469_109959094F014089GGAMSDYVEIIYPQSMTAKLMKNGEVIAEYKVEQCDGCAKVMKLDAFGYKVGQAGEKLAWLCGGCR*
Ga0074469_109959096F025683GGAGMVLDLLDPETLGRLVLVIILMVISAAAGYAKGFKEGKREGMARRKAMVRHIANKAVK*
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