Scaffold Ga0074471_10717361

Overview

Basic Information

• Taxon OID: 3300005831
• Scaffold ID: Ga0074471_10717361
• Source Dataset Name: Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.43_YBM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5199
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Astoria, Oregon, USA
• Coordinates
  • Lat. (^o): 46.17469
  • Long. (^o): -123.84933
  • Depth (m): .06

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007170	Metagenome / Metatranscriptome	356	N
F056616	Metagenome / Metatranscriptome	137	N
F103260	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074471_107173612	F103260	GGA	MGIKAIKAVAPEVEHGILEVDLSEWAGEGAIVKFRQPKAADYFPDATELQKIRMSYAEMAPNLLVNCLIIGKCYIPDMDDPSDAAFIRVLLDLSRKNTQAFYAIYWSFIGKYIDVSVTKEVDEAKNDSAV*
Ga0074471_107173613	F056616	AGGAG	MAFTKSFGLVGENCVVTIAFGGFQDGSPSAFTANTYTCLAKSVRTSTSVDTADVSALCDTTKKMQVTKASGSIDIELLVDGTQQADGSPIFFNKEGYYCQVVITPGALSAKTFVGVVTATGIGIAAGEAVTETATIMLGANGVTTAWTSA*
Ga0074471_107173614	F007170	AGG	MAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGFQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGASGDDEDALCGARVFTTPNYRITVWDTESGAMSMARIQTIMNRIDTLLDNQTVTTTTPRLYVRRTSTDQTFALSDGGRTDYGVTAVYRCLTQQ*