Scaffold Ga0074471_10324098

Overview

Basic Information

• Taxon OID: 3300005831
• Scaffold ID: Ga0074471_10324098
• Source Dataset Name: Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.43_YBM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1001
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Astoria, Oregon, USA
• Coordinates
  • Lat. (^o): 46.17469
  • Long. (^o): -123.84933
  • Depth (m): .06

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000866	Metagenome / Metatranscriptome	855	Y
F007402	Metagenome / Metatranscriptome	352	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074471_103240981	F000866	N/A	RQRQTDRSNIRENNKLVDYNYKVGDKVLIRKDGILRKAESIWNKDPWTITTVHTNGTIRIQCGTKSERINIRRVTPFSEELLI*
Ga0074471_103240982	F007402	N/A	MVLPHHAGKFLPKTKGFFPHDFTLIASVVGESVIGHGIVGKDIPIMARLAEARRWSKR*