Scaffold Ga0074475_10734882

Overview

Basic Information

• Taxon OID: 3300005828
• Scaffold ID: Ga0074475_10734882
• Source Dataset Name: Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.182_BBI
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1246
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Ilwaco, Washington, USA
• Coordinates
  • Lat. (^o): 46.30247
  • Long. (^o): -123.03645
  • Depth (m): .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000903	Metagenome / Metatranscriptome	843	Y
F003182	Metagenome / Metatranscriptome	502	Y
F058101	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074475_107348822	F058101	GGA	MTINPKDIHIATDGRIYSFSGFGGFMNCSICDNDSMVNEYDRQDDGAVMWFCKPCEDRLHL*
Ga0074475_107348823	F003182	AGGAG	MHILLFDCSICSKLYGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIMDLSQ
Ga0074475_107348824	F000903	N/A	FEYVAQMAESMAAEWVVAKRLGYDYTPGITWDKSKADVGDHIEVKWSRNPASNLWIQESDRHDRDIAVLVTGNSPKMHIVGWMPVVIAKKPRYRNPSQDNWSVPQINLQPIETLQRSNYAHSIV*