Scaffold Ga0074475_10137977

Overview

Basic Information

• Taxon OID: 3300005828
• Scaffold ID: Ga0074475_10137977
• Source Dataset Name: Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.182_BBI
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 644
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Ilwaco, Washington, USA
• Coordinates
  • Lat. (^o): 46.30247
  • Long. (^o): -123.03645
  • Depth (m): .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049942	Metagenome / Metatranscriptome	146	N
F101177	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074475_101379772	F049942	GGAGG	MDKDIDYLNDLDRGDYDCRKGYPHKEGQSHAYDIGYGARYVLEQMQLAGAIE*
Ga0074475_101379773	F101177	N/A	MSDITGGRSDDLDGYEKRPIMAEPSQYEKEQEVIRMAKHKKDVDHFMRAQINQFARSSEQRDAMLKQHGLEVE*